DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and HNRNPAB

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_112556.2 Gene:HNRNPAB / 3182 HGNCID:5034 Length:332 Species:Homo sapiens


Alignment Length:364 Identity:89/364 - (24%)
Similarity:142/364 - (39%) Gaps:112/364 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AGNCASSACLGD---CKGDGKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVL 64
            ||...::...|:   .:||...|.|.|  |...|:|:||||..|:.:.|:.:|::||.|.|..:.
Human    40 AGGATAAPPSGNQNGAEGDQINASKNE--EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK 102

  Fly    65 RDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTIDNKIVETKHALP-RQDFKRGGGVGSVVGSFGC 128
            .||.:..||||||:.:.|..|||.|...:.|.:|.::::.|.|:. ::|                
Human   103 MDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD---------------- 151

  Fly   129 EAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKA 193
                 ..|:||:|||.....|..:||||.:||.:.:::|.||.:..::|.|.|:.|.:....:|.
Human   152 -----PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211

  Fly   194 LAPRKHWILQTLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYN------------- 245
            |..:.|.:..:..|:|.:..|              ..|...|..:....|.|             
Human   212 LEKKFHTVSGSKCEIKVAQPK--------------EVYQQQQYGSGGRGNRNRGNRGSGGGGGGG 262

  Fly   246 ------NPNYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGPD 304
                  |..|..|          :..|:.:                     ||       |:||.
Human   263 GQSQSWNQGYGNY----------WNQGYGY---------------------QQ-------GYGPG 289

  Fly   305 MWS-SYPKTGIYSAQEWTSSKVAEWGPKAGHKHAQTSTN 342
            ... .|...|.|.           :||  |:.::|.|||
Human   290 YGGYDYSPYGYYG-----------YGP--GYDYSQGSTN 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 30/77 (39%)
RRM2_hnRNPA_like 137..209 CDD:240774 23/71 (32%)
HNRNPABNP_112556.2 CBFNT 1..70 CDD:311868 9/31 (29%)
RRM1_hnRNPAB 66..145 CDD:410151 31/80 (39%)
RRM2_hnRNPAB 150..229 CDD:409997 26/99 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.920

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