Protein Alignment Rbp4 and ssx

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 410
• Identity: 79/410 - (19%)
• Similarity: 150/410 - (36%)
• Gaps: 107/410 - (26%)

  Fly    14 DCKGDGKTAIKEEGYEHLRK-----IFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSR 73
            |.:|:..:|.:::..:.:.:     :.|..|....|...|...||..|.:....::||..:.:|.
  Fly    70 DNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSF 134

  Fly    74 GFGFVTY-VDPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKR 137
            |:|||.| .:..|.:.:|:.....:.||.::..:|.|       ||..            :....
  Fly   135 GYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARP-------GGQS------------IKDTN 180

  Fly   138 IFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKH--- 199
            :::..|....:::::...||.:|.:....:|.|:.|||.|...|:.:.....|::|:....:
  Fly   181 LYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVP 245

  Fly   200 -------WILQTLVEVKRSTQKADRRFRFPI-FSSVRAGYIPPQ---------PATADSYNYNNP 247
                   |:  .|.|.....:.|  :|...| ..:...|..||.         |...:::::||
  Fly   246 EGGSQPIWV--RLAEEHGKAKAA--QFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNNHHHNN- 305

  Fly   248 NYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPTPG-----QNMAASLPSQQLAEHSLNGHGPDMWS 307
            ::||:     :||        |:..|..|...|.     .:|....|:.....|..|.|..:..:
  Fly   306 HHNPH-----MPP--------HHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNN 357

  Fly   308 SYPKTGIYSAQEWTSSKVAEWGPKAGHKHAQTSTNDRAKIDLKELQAATFNNKLDFGARGDADRM 372
            ::...|               ||   |.|           .::::.....|  :..|..
  Fly   358 NHHNMG---------------GP---HPH-----------HMQQMHPMGMN--MGMGVN------ 385

  Fly   373 SGAGLGLGLT--GGAAVGVG 390
            .|.|:|:|:.  ||...|.|
  Fly   386 MGMGMGMGMPIHGGGGGGGG 405

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	20/82 (24%)
		RRM2_hnRNPA_like	137..209	CDD:240774	16/81 (20%)
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	21/86 (24%)
		RRM_SF	179..257	CDD:302621	14/79 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.010