DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp4 and nop4

DIOPT Version :10

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_596114.1 Gene:nop4 / 2540871 PomBaseID:SPBC4F6.14 Length:674 Species:Schizosaccharomyces pombe


Alignment Length:174 Identity:48/174 - (27%)
Similarity:79/174 - (45%) Gaps:28/174 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRA----RP 94
            :|:..|:.||..:.|..|||..|.:..|||:.:|.:..:||:||||:   ..:|..|||    :.
pombe     7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF---SMLEDAQRAAKELKN 68

  Fly    95 HTIDNKIVETKHALPRQ----DFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGL-----KEYHDEN 150
            ..:..:|:....|.||:    |..:...|...:..       .|..|:.:..|     |..|   
pombe    69 KKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQ-------DNRPRLIIRNLPWSIKKPQH--- 123

  Fly   151 IVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKAL 194
             :..:||:||.|..:| :..:..||...|.|:...|..:||:|:
pombe   124 -LEPHFSKFGKVREIK-IPTKGGGRMCGFAFVWMKDRKAAEEAM 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069 24/74 (32%)
RRM2_hnRNPA_like 137..209 CDD:409766 18/63 (29%)
nop4NP_596114.1 RRM1_Nop4p 5..84 CDD:410075 25/79 (32%)
RRM2_Nop4p 107..189 CDD:410076 18/64 (28%)
RRM3_Nop4p 276..390 CDD:410077
RRM4_Nop4p 458..614 CDD:410078
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.