DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and ELAVL3

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:XP_024307178.1 Gene:ELAVL3 / 1995 HGNCID:3314 Length:424 Species:Homo sapiens


Alignment Length:435 Identity:94/435 - (21%)
Similarity:153/435 - (35%) Gaps:121/435 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 DGKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVD 82
            |.||           .:.:..|....|.:..:..|...|.:....::||.::..|.|:|||.|.|
Human    36 DSKT-----------NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSD 89

  Fly    83 PKSVE-IVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEY 146
            |...: .:.......:..|.::..:|.|                   .:..:....:::.||.:.
Human    90 PNDADKAINTLNGLKLQTKTIKVSYARP-------------------SSASIRDANLYVSGLPKT 135

  Fly   147 HDENIVREYFSQFGPVASVKLLMDRETG---RQRAFGFLEFVDPSSAEKALAPRK---HWILQTL 205
            ..:..:.:.|||:|.:.:.::|:|:.||   |:.|.|.......|.......|.|   |...:..
Human   136 MSQKEMEQLFSQYGRIITSRILVDQVTGQAVREGAPGGGAGQRQSGGTNVGKPTKMPGHEAGKGE 200

  Fly   206 VEVKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYNNPNYNPYL-AQSVLPPSAFTNGWAH 269
            |.:.|..|            ..|.|:  |.|....|.......::..: |:..:..   .||   
Human   201 VGLHRRGQ------------GRRDGH--PCPLAGVSRGVGFIRFDKRIEAEEAIKG---LNG--- 245

  Fly   270 YVIPMAPKP----TPGQNMAASLPSQQLAEHSLNGHGPDMWSSYPKTGIY--SAQEWTSSKVAEW 328
                  .||    .|.....|:.|||:..:..|             |.:|  ||:.:        
Human   246 ------QKPLGAAEPITVKFANNPSQKTGQALL-------------THLYQSSARRY-------- 283

  Fly   329 GPKAGHKHAQTSTNDRAKIDLKELQAATFNNKLDFGARGD---ADRMSGAGLGLGLTGGAAVGVG 390
               ||..|.||   .|.::|.....|....:.|...||..   .|.|||.. |:||:|||| |.|
Human   284 ---AGPLHHQT---QRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLA-GVGLSGGAA-GAG 340

  Fly   391 AIKKW--------PTQD----YKVFKPAKSPTNGVIPKIGKEATT 423
                |        |..|    :::|.|..:.||   .|:.::.||
Human   341 ----WCIFVYNLSPEADESVLWQLFGPFGAVTN---VKVIRDFTT 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 16/77 (21%)
RRM2_hnRNPA_like 137..209 CDD:240774 18/77 (23%)
ELAVL3XP_024307178.1 RRM 36..423 CDD:330708 94/435 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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