DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and Rbm3

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001159881.1 Gene:Rbm3 / 19652 MGIID:1099460 Length:154 Species:Mus musculus


Alignment Length:112 Identity:37/112 - (33%)
Similarity:58/112 - (51%) Gaps:9/112 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 EEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIV 89
            |||     |:|:|||:..|..:.|...||.||.:::.||::|..:..||||||:|:.:|:.....
Mouse     4 EEG-----KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63

  Fly    90 QRA-RPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSF---GCEAGF 132
            .|| ...::|.:.:...||.......|||..|....|:   |.:.|:
Mouse    64 MRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGY 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 27/77 (35%)
RRM2_hnRNPA_like 137..209 CDD:240774
Rbm3NP_001159881.1 RRM_CIRBP_RBM3 6..85 CDD:240895 28/83 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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