DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and T07F10.3

DIOPT Version :10

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_506222.2 Gene:T07F10.3 / 179765 WormBaseID:WBGene00011589 Length:371 Species:Caenorhabditis elegans


Alignment Length:395 Identity:81/395 - (20%)
Similarity:122/395 - (30%) Gaps:141/395 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSV 86
            ||...|....|.::||.:.|..|.|||...|::.| .|...|.|..|.:..:|:.|:.::     
 Worm    58 AISLSGNNAQRTLWIGDVPTDWTEETLSQVFTECG-HAPYKVKRVYVKDELKGYCFIEFI----- 116

  Fly    87 EIVQRARPHTID---NKIVETKHAL-----------PRQDFKRGGGVGSVVGSFGCEAGFMNSKR 137
             ....||....|   |:|...|...           |..:|..  .|.||.....          
 Worm   117 -TFDEARQTLYDLNGNRIPGFKDIRFNLCFANDSYNPNSEFNL--HVSSVPDDMA---------- 168

  Fly   138 IFLGGLKEYHDENIVREYFSQFGPVASVKL--LMDRETGRQRAFGFLEFVDPSSAEKALAPRKHW 200
                      |..:.| .|.::......|:  .:|   |..:..||:.|.:.:..:.|       
 Worm   169 ----------DAELYR-IFDKYQSCRGAKMFRFVD---GSSKGSGFVRFGNQTDQQMA------- 212

  Fly   201 ILQTLVEVKRS----------------------------TQKADRRFRFPIFSSVRAG-YIPPQP 236
                |||:.|:                            :|:.||| |.......|.| .:|.|.
 Worm   213 ----LVEMHRTKVGGCRIILKLAGSRGERLDRGESRQFKSQRNDRR-RDEKSGQYRNGTAVPQQT 272

  Fly   237 ATADSYNYNNPNYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGH 301
            ...|:|.      ||.    |:|......|..|   |..|.|                      .
 Worm   273 QVYDAYG------NPV----VVPVDKNIYGTDH---PWGPFP----------------------D 302

  Fly   302 GPDMWSSYPKTGIYSAQEWTSSKVAEWGPKAGHKHAQTSTNDRAKIDLKELQ--AATFN---NKL 361
            .||:.|      |......|:    ::.|:..:|.....| |:..:||:..:  :..||   .|.
 Worm   303 DPDLDS------IIGLDLLTT----KYRPQIANKRLMIDT-DQFMLDLESSRWSSIAFNTNIKKE 356

  Fly   362 DFGAR 366
            ||..|
 Worm   357 DFEKR 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069 20/73 (27%)
RRM2_hnRNPA_like 137..209 CDD:409766 13/73 (18%)
T07F10.3NP_506222.2 RRM1_SECp43_like 69..149 CDD:409780 21/86 (24%)
RRM_SF 155..234 CDD:473069 18/115 (16%)

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