Protein Alignment Rbp4 and sqd-1

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 331
• Identity: 87/331 - (26%)
• Similarity: 129/331 - (38%)
• Gaps: 71/331 - (21%)

  Fly    17 GDGKTAIKEEGY----EHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGF 77
            |:....|||.|:    ...:|||:||:|.:...|.|...|:|:|.||.|.|..|..:..||||.|
 Worm    10 GNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAF 74

  Fly    78 VTYVDPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGG 142
            |.:...:..::...||..||..|.||.|.|..|:                       :|::|:||
 Worm    75 VEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE-----------------------NKKVFVGG 116

  Fly   143 LKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVE 207
            |...:.|..:|.:|.|||.|..::...|::|..:|.|.|:.|.:..||:||.:..|........:
 Worm   117 LPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD 181

  Fly   208 VKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYNNPNYN-------------PYLAQSVLP 259
            ||::..:..   |||       |.....|.....|.....|.|             ||.|.....
 Worm   182 VKKAVPQGK---RFP-------GAQGRMPGGRGMYGGRGGNNNSGWYAGWGQIGAMPYGATGAAW 236

  Fly   260 PSAFTNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGPDMWSSYPK-TGIYSAQEWTSS 323
            ...:.||:.            ||        |..|.|:.:|......|.|.. .|..|..::..:
 Worm   237 GDWYGNGYY------------GQ--------QGAAHHNNSGSSQGYGSGYQSFAGNNSGFDYQQA 281

  Fly   324 KVAEWG 329
            :.|..|
 Worm   282 QGARQG 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	31/76 (41%)
		RRM2_hnRNPA_like	137..209	CDD:240774	22/71 (31%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	30/73 (41%)
		RRM_SF	111..185	CDD:418427	24/73 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910