Protein Alignment Rbp4 and pab-1

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: NP_001369814.1
• Gene: pab-1 / 172920
• WormBaseID: WBGene00003902
• Length: 646
• Species: Caenorhabditis elegans
• Alignment Length: 468
• Identity: 97/468 - (20%)
• Similarity: 156/468 - (33%)
• Gaps: 157/468 - (33%)

  Fly    19 GKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDP 83
            |:||      :....:::.........|||...|::||.:....|:  .|...|:|||||.:.:|
 Worm   206 GETA------KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANP 262

  Fly    84 KSVE-IVQRARPHTI---DNKI--------------VETKHALPRQD-FKRGGGVGSVVGSFGCE 129
            :..| .||.....||   |.|:              ::.||...:.: .::..||
 Worm   263 EEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV---------- 317

  Fly   130 AGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKAL 194
                   .:::..|.|..|::.:::.|..:|.:.|.|::.| |.||.:.|||:.|..|..|..|:
 Worm   318 -------NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAV 374

  Fly   195 AP-RKHWILQTLVEVKRSTQKADRRFRFPI-----FSSVRA-GYIPPQPATADSYNYNNPNYNPY 252
            .. ....:....:.|..:.:|.|||.:...     .:|:|. |.:|    .|..||...|....|
 Worm   375 TEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVP----GAAMYNPTQPGPGYY 435

  Fly   253 LAQSVLPPSAFTNG---------WA---------HYVIPMAP--------KPTPGQNMAASLPSQ 291
            :|..:.....|..|         |.         .|::...|        :|...|......|.|
 Worm   436 VANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGPRGPPQQ 500

  Fly   292 --QLAEHSLNGHGPDMWSSYPKT---GIYS------AQEWTSSKVAEWGPKA------------- 332
              |:|:..:...||      |:|   |:..      .|:....:.|..||||
 Worm   501 YNQVAQGGVRMQGP------PRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQ 559

  Fly   333 ----------------------------------------GHKHAQTSTNDRAKIDLKEL----- 352
                                                    |||.|...|....:||..||
 Worm   560 GIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQ 624

  Fly   353 QAATFNNKLDFGA 365
            .:..|.:|:|..|
 Worm   625 DSELFRSKVDEAA 637

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	24/94 (26%)
		RRM2_hnRNPA_like	137..209	CDD:240774	18/72 (25%)
pab-1	NP_001369814.1	PABP-1234	32..640	CDD:130689	97/468 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910