DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp4 and SRSF12

DIOPT Version :10

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_542781.3 Gene:SRSF12 / 135295 HGNCID:21220 Length:261 Species:Homo sapiens


Alignment Length:237 Identity:51/237 - (21%)
Similarity:92/237 - (38%) Gaps:46/237 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 ENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAP-RKHWILQTLVEVKRST 212
            |::.|| |.::||:..|.:.:|..|.|.|.|.:::|.|...||.||.. .:.|:....:|::.: 
Human    24 EDLRRE-FGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFA- 86

  Fly   213 QKADRRF--------RFPIF-SSVRAGYIPPQPAT-------------ADS--------YNYNN- 246
             :.||:.        |.|.. |..|....|.|..|             :||        ::|:. 
Human    87 -QGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQS 150

  Fly   247 -------PNYNPYLAQSVLPPSAF-TNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGP 303
                   |..:....||..|...| :.|.:..........:.|::.::|...|..:......||.
Human   151 KSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR 215

  Fly   304 DMWSSYPKTGIYSAQEWTSSKVAEWGPKAGHKHAQTSTNDRA 345
            .. .|..::...|.:.:|:|:...  ..|.|.|.::.:..|:
Human   216 HS-DSIARSPCKSPKGYTNSETKV--QTAKHSHFRSHSRSRS 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069
RRM2_hnRNPA_like 137..209 CDD:409766 20/60 (33%)
SRSF12NP_542781.3 RRM_SRSF10_SRSF12 10..93 CDD:240758 22/71 (31%)
PABP-1234 <12..211 CDD:130689 41/189 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 86..261 31/174 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.