DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and AgaP_AGAP009952

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:XP_319085.4 Gene:AgaP_AGAP009952 / 1279370 VectorBaseID:AGAP009952 Length:363 Species:Anopheles gambiae


Alignment Length:400 Identity:82/400 - (20%)
Similarity:142/400 - (35%) Gaps:119/400 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GDCKGDGKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDP---VSNH--- 71
            |..:.|.||           .:.:..|..|.|.|.:|..||..|.|....::||.   |:.|   
Mosquito    19 GGGQEDSKT-----------NLIVNYLPQQMTQEEIRSLFSSIGEVESCKLIRDKPGCVTRHAHT 72

  Fly    72 ----------------SRGFGFVTYV----DPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRG 116
                            |.|:|||.|.    ..|::..:...|   :.||.::...|.|..:..:|
Mosquito    73 HTYIHLFDGCYLLTGQSLGYGFVNYQRAEDASKAINTLNGLR---LQNKQIKVSFARPSSEAIKG 134

  Fly   117 GGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGF 181
            .                   .:::.||.:...:..:...||.:|.:.:.::|.|..||..:..||
Mosquito   135 A-------------------NLYVSGLPKNMLQADLEALFSPYGRIITSRILCDNITGLSKGVGF 180

  Fly   182 LEFVDPSSAEKALAPRKHWILQTLVE---VKRSTQKADRRFRFPIFSSVRAGYIPPQPA------ 237
            :.|.....||||:......:.:...|   ||.:...:..:...|:     |.|:.||.|      
Mosquito   181 IRFDQRMEAEKAIKELNGTVPKGSTEPITVKFANNPSSTKTVPPL-----AAYLGPQAARRFPGP 240

  Fly   238 ---------TADSYNYNNPNYNPYLAQSVLPPSAFTN--GWAHYVIPMAPKPTPGQNMAASLPSQ 291
                     ...:|.| :|.....||.|::|.:|..|  ||..:|..:||:              
Mosquito   241 IHHPTGRFSAIPNYRY-SPLAGDLLANSMIPTNAIANGSGWCIFVYNLAPE-------------- 290

  Fly   292 QLAEHSLNGHGPDMWSSYPKTGIYSA----QEWTSSKVAEWGPKAGHKHAQTSTN-DRAKIDLKE 351
              .|.::      :|..:...|...:    ::..::|...:|       ..|.|| |.|.:.::.
Mosquito   291 --TEENV------LWQLFGPFGAVQSVKVIKDLQTNKCKGFG-------FVTMTNYDEAVVAIQS 340

  Fly   352 LQAATFNNKL 361
            |...|..|::
Mosquito   341 LNGYTLGNRV 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 24/102 (24%)
RRM2_hnRNPA_like 137..209 CDD:240774 17/74 (23%)
AgaP_AGAP009952XP_319085.4 ELAV_HUD_SF 24..361 CDD:273741 81/394 (21%)
RRM1_Hu 26..125 CDD:241094 25/112 (22%)
RRM2_Hu 135..213 CDD:241096 19/96 (20%)
RRM3_Hu 279..356 CDD:240823 18/100 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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