DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and NAM8

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:201 Identity:41/201 - (20%)
Similarity:79/201 - (39%) Gaps:70/201 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 SSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHF-GKYGEIESINVKTDPQTGRSRGFAFIVF 104
            |:.|.|..:.:..::..:|||.|:...||.:|.:.| .:|.......:..|..||.|:|:.|:.|
Yeast   148 SNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKF 212

  Fly   105 TNTE-------------------AIDKVSAADEHI------------INSKKVDPK---KAKA-- 133
            ||::                   .:...|...:|:            :|::.||.:   |.::  
Yeast   213 TNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFL 277

  Fly   134 ---------------------------------RHGKIFVGGLTTEISDEEIKTYFGQFGNIVEV 165
                                             .:..:|:|||::.::::|::.||..||.||.|
Yeast   278 SNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYV 342

  Fly   166 EMPFDK 171
            ::|..|
Yeast   343 KIPVGK 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 23/102 (23%)
RRM2_hnRNPD_like 137..211 CDD:240775 14/35 (40%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023
RRM2_SECp43_like 162..241 CDD:409781 18/78 (23%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782 14/37 (38%)
Blue background indicates that the domain is not in the aligned region.

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