Protein Alignment sqd and SGN1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_012266.1
• Gene: SGN1 / 854817
• SGDID: S000001440
• Length: 250
• Species: Saccharomyces cerevisiae
• Alignment Length: 271
• Identity: 53/271 - (19%)
• Similarity: 93/271 - (34%)
• Gaps: 85/271 - (31%)

  Fly    28 ENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQ 92
            |..||.|...|.        .|..:.:|::           |.||.:..||      ::::..||
Yeast     5 EKVDAKATLKTE--------ISNNKKNDKQ-----------ELELDELVGK------LSIEGTPQ 44

  Fly    93 TGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFG 157
            ..:                |:|..::|        ..:.:|....||||.:|.:::.|:|:.:|.
Yeast    45 VSQ----------------KLSKEEKH--------AHQLEADSRSIFVGNITPDVTPEQIEDHFK 85

  Fly   158 QFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGG 222
            ..|.|..:.:.:|:.....||:.:|.|:|.......|:....::.||::.|.|
Yeast    86 DCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSR------------ 138

  Fly   223 MRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGY------ 281
                .|..:.|....|..:..|..||.            ..|....|.:.....||..|
Yeast   139 ----KRTNIPGFNRHYNSQNQYFQQWQ------------WNYPLMAYPNPDTFPYYPPYPPNQSP 187

  Fly   282 --DYGYDGYGY 290
              ::||:...|
Yeast   188 NQNFGYNKNNY 198

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	10/70 (14%)
		RRM2_hnRNPD_like	137..211	CDD:240775	20/73 (27%)
SGN1	NP_012266.1	PABP-1234	<52..>202	CDD:130689	37/183 (20%)
		RRM_II_PABPs	65..137	CDD:409747	19/71 (27%)