DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and HRP1

DIOPT Version :9

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_014518.1 Gene:HRP1 / 853997 SGDID:S000005483 Length:534 Species:Saccharomyces cerevisiae


Alignment Length:439 Identity:117/439 - (26%)
Similarity:174/439 - (39%) Gaps:120/439 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DTEINGEDFTKDVTADGPGSENGDAGAAGS------------TNGSSDNQSAAS------GQRDD 54
            |.|.:.||...:...:...|.|.:|.|:.:            |.......|:.|      .|..:
Yeast    83 DKEGSNEDTKNEKKQESATSANANANASSAGPSGLPWEQLQQTMSQFQQPSSQSPPQQQVTQTKE 147

  Fly    55 DR----------KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEA 109
            :|          |:|:|||:|:|||..||::|||||.:..:.:..||.|||||||.|:.|....:
Yeast   148 ERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSS 212

  Fly   110 IDKVSAADEHIINSKKVDPKKAKARH-----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
            :|:| ...:||::.|.:|||:|..|.     |||||||:..::..:|.:.:|.|:|.|::.::..
Yeast   213 VDEV-VKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML 276

  Fly   170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMM---GGMRGGPRGGM 231
            ||...|.:||.|:|:||...|..:.:........:::::|||.|:...|..   ||..||.....
Yeast   277 DKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNGGNNMNR 341

  Fly   232 RGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYG---------DYY--AGGYY------N 279
            ||  |.:|.:|.:|..             |.....|||.         |||  ...||      .
Yeast   342 RG--GNFGNQGDFNQM-------------YQNPMMGGYNPMMNPQAMTDYYQKMQEYYQQMQKQT 391

  Fly   280 GYDYG-------------YDGYGYGGGF--------EGNGYGG------------------GGGG 305
            |.||.             ..|:......        :.|...|                  |...
Yeast   392 GMDYTQMYQQQMQQMAMMMPGFAMPPNAMTLNQPQQDSNATQGSPAPSDSDNNKSNDVQTIGNTS 456

  Fly   306 NMGGGRGGPRGGGGPKG----------GGGFNGGKQRGGGGRQQRHQPY 344
            |...|........||||          |.|:|  :.||...|..|.:.|
Yeast   457 NTDSGSPPLNLPNGPKGPSQYNDDHNSGYGYN--RDRGDRDRNDRDRDY 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM_SF 58..129 CDD:302621 32/70 (46%)
RRM2_hnRNPD_like 137..211 CDD:240775 22/73 (30%)
HRP1NP_014518.1 PABP-1234 <144..463 CDD:130689 94/334 (28%)
RRM1_Hrp1p 161..236 CDD:409991 35/75 (47%)
RRM2_Hrp1p 244..321 CDD:409767 24/76 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343283
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.740

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