Protein Alignment sqd and NOP6

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_010068.1
• Gene: NOP6 / 851313
• SGDID: S000002372
• Length: 225
• Species: Saccharomyces cerevisiae
• Alignment Length: 220
• Identity: 48/220 - (21%)
• Similarity: 82/220 - (37%)
• Gaps: 54/220 - (24%)

  Fly    14 EDFTKDVTADG--PGSENGDAG---------AAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWET 67
            :|..|:...:|  |.|..|:.|         ......|...|     |::.:...:|||.|..:.
Yeast    30 KDVKKEQAPEGKRPNSAAGNDGEEPVKKKRKTRRGRGGKGKN-----GKKGNRFIVFVGSLPRDI 89

  Fly    68 TEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAK 132
            |..||::|| |....:.|.::.|      :|.||:.|         .|..:.....:::|  .|.
Yeast    90 TAVELQNHF-KNSSPDQIRLRAD------KGIAFLEF---------DADKDRTGIQRRMD--IAL 136

  Fly   133 ARHGKIFVGGLTTEISDEEIKTYF--GQFGNIVEVEMPFDKQKSQRKGFCFITFDSE--QVVTDL 193
            .:||        |.:.:::|....  |..||..|   ..:|.|::.     |..|.|  :.:|.:
Yeast   137 LQHG--------TLLKEKKINVELTVGGGGNSQE---RLEKLKNKN-----IKLDEERKERLTKM 185

  Fly   194 LKTPKQKIAGKEVDVKRATPKPENQ 218
            :....||...|.......|...:|:
Yeast   186 INDGNQKKIAKTTATAAQTSGTDNK 210

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	18/70 (26%)
		RRM2_hnRNPD_like	137..211	CDD:240775	15/77 (19%)
NOP6	NP_010068.1	NatA_aux_su	<1..55	CDD:463630	7/24 (29%)
		RRM_Nop6	78..151	CDD:409834	23/98 (23%)