DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and GBP2

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_009916.1 Gene:GBP2 / 850346 SGDID:S000000517 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:241 Identity:49/241 - (20%)
Similarity:99/241 - (41%) Gaps:39/241 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NKQVDTEINGEDFTKDVT------ADGPGSENGDAGAAGSTNGSS---------DNQSAASGQRD 53
            |.:.|....|..:..|..      ..|.|......|..|...|.:         :.|..|: :|:
Yeast    56 NDRYDQSYGGSRYHDDRNWPPRRGGRGRGGSRSFRGGRGGGRGRTLGPIVERDLERQFDAT-KRN 119

  Fly    54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI-DKVSAAD 117
            .:..:||..|:::.|.::|::.||..||:...::.|  ..|..||...:.||..|:: |.:|..|
Yeast   120 FENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIIT--SKGHHRGMGTVEFTKNESVQDAISKFD 182

  Fly   118 EHIINSKKV-------DPKKAKARHGK-----------IFVGGLTTEISDEEIKTYFGQFGNIVE 164
            ..:...:|:       .|:.||....|           :|:..|...::.:.:|..|.:.|:::.
Yeast   183 GALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLR 247

  Fly   165 VEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT-PKQKIAGKEVDVK 209
            .::..|.....| ||..:.:.:|..:...:.| ...::.|:.::|:
Yeast   248 ADVELDFNGFSR-GFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVR 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 20/78 (26%)
RRM2_hnRNPD_like 137..211 CDD:240775 14/85 (16%)
GBP2NP_009916.1 RRM1_HRB1_GBP2 121..197 CDD:410184 20/77 (26%)
RRM2_HRB1_GBP2 218..292 CDD:410185 12/74 (16%)
RRM3_HRB1_GBP2 347..425 CDD:410186
Blue background indicates that the domain is not in the aligned region.

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