DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and AT1G78260

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_565175.1 Gene:AT1G78260 / 844161 AraportID:AT1G78260 Length:287 Species:Arabidopsis thaliana


Alignment Length:189 Identity:53/189 - (28%)
Similarity:70/189 - (37%) Gaps:35/189 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKI 201
            |:|||||..|...:|::.||.|||.|:|..:..||...:.||:.|:||......|..:..|...|
plant    18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVI 82

  Fly   202 AGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGA 266
            .|::.:...|:           .|.||.....|||..|....|  |..|..:|.|.........|
plant    83 DGRKANCNIAS-----------FGRPRPSPPRGRGQTGSPSQY--QSGGPSTYTGMAAPLPPAAA 134

  Fly   267 GG--YGDYYAGGYYNGYDYGYDGYGYGGGF-------------EGNGYGGGGGGNMGGG 310
            ..  |..|       ||.|..|.:||....             :...||||.......|
plant   135 PQLMYPSY-------GYTYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPSSSG 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763
RRM2_hnRNPD_like 137..211 CDD:240775 26/73 (36%)
AT1G78260NP_565175.1 RRM_RBM24_RBM38_like 17..92 CDD:409818 26/73 (36%)
Blue background indicates that the domain is not in the aligned region.

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