Protein Alignment sqd and AT1G76460

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_565132.2
• Gene: AT1G76460 / 843979
• AraportID: AT1G76460
• Length: 285
• Species: Arabidopsis thaliana
• Alignment Length: 283
• Identity: 66/283 - (23%)
• Similarity: 95/283 - (33%)
• Gaps: 98/283 - (34%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |:|||||:|||..:.||.||.:||||....|..|..||||:|:.|:.|.:.||..:..|....||
plant    25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPII 89

  Fly   122 NSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 186
            :.::.:...|.
plant    90 DGRRANCNLAS------------------------------------------------------ 100

  Fly   187 EQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQ 251
                   |..|:..:....:.......:|.:..:|.:: ||||.:.|           |..:...
plant   101 -------LGRPRPPLPYAVIPNMPGRLRPASPYIGNVQ-GPRGSLIG-----------NYPYQQP 146

  Fly   252 GSYGGYGGGYGGYGAGGYGDYY----AGGYYNGY-------DYGYDG------YGYGGGFE---- 295
            ..|....|....||...||..|    :.|.|:.|       .||..|      |.||...:
plant   147 LPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPN 211

  Fly   296 GNGYGGGGGGNMGGGR----GGP 314
            |:||....|.::.|..    |||
plant   212 GHGYTAVQGYSVPGSHILQLGGP 234

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	30/70 (43%)
		RRM2_hnRNPD_like	137..211	CDD:240775	2/73 (3%)
AT1G76460	NP_565132.2	RRM_RBM24_RBM38_like	24..99	CDD:409818	31/73 (42%)
		PABP-1234	<37..245	CDD:130689	57/271 (21%)