Protein Alignment sqd and UBP1A

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_849806.1
• Gene: UBP1A / 841846
• AraportID: AT1G54080
• Length: 430
• Species: Arabidopsis thaliana
• Alignment Length: 193
• Identity: 50/193 - (25%)
• Similarity: 79/193 - (40%)
• Gaps: 56/193 - (29%)

  Fly    44 NQSAASGQRDDDR---KLFVGGLSWETTEKELRDHFGKYGEIES----INVKTDPQTGRSRGFAF 101
            |.:.|:|||:|..   .:|||.||.|.|:..|.|.|..:....|    ..|..|.:|||||||.|
plant   133 NWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGF 197

  Fly   102 IVFTNTE----AIDKVS--------------------AADEHIINSKKV---------------- 126
            :.|.|.:    ||::::                    ..|:|..:.|.|
plant   198 VSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSN 262

  Fly   127 -DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGN--IVEVEMPFDKQKSQRKGFCFITFDS 186
             |..:...:...::||.|:.|::..::...|...|.  |.||.:..|      |||.|:.:::
plant   263 EDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD------KGFGFVRYNT 319

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	30/115 (26%)
		RRM2_hnRNPD_like	137..211	CDD:240775	14/52 (27%)
UBP1A	NP_849806.1	RRM1_PUB1	65..135	CDD:410026	1/1 (100%)
		RRM2_PUB1	147..230	CDD:410031	25/82 (30%)
		RRM_SF	273..349	CDD:473069	14/53 (26%)