Protein Alignment sqd and Y14

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_564591.1
• Gene: Y14 / 841576
• AraportID: AT1G51510
• Length: 202
• Species: Arabidopsis thaliana
• Alignment Length: 191
• Identity: 43/191 - (22%)
• Similarity: 79/191 - (41%)
• Gaps: 60/191 - (31%)

  Fly     3 ENKQVDTEINGEDFTKDVTADGPGSENGD----AG------AAGSTNGSSDNQSAASG---QRDD 54
            |::.||.|...:|...:   :|...:..|    ||      |....||.|..::...|   ::|.
plant     5 ESEAVDFEPEEDDLMDE---EGTAIDGADVSPRAGHPRLKSAIAGANGESAKKTKGRGFREEKDS 66

  Fly    55 DRK---------------------------LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQ 92
            ||:                           :.|.|:..||.|:::.:.||.:|||:::|:..|.:
plant    67 DRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRR 131

  Fly    93 TGRSRGFAFIVFTNTE----AIDKVSAADEHIINSKKVD------P------KKAKARHGK 137
            :|..:|:|.|.:...|    ||..::.| |.:..:..||      |      ::..:|:|:
plant   132 SGYVKGYALIEYEKKEEAQSAISAMNGA-ELLTQNVSVDWAFSSGPSGGESYRRKNSRYGR 191

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	24/86 (28%)
		RRM2_hnRNPD_like	137..211	CDD:240775	0/1 (0%)
Y14	NP_564591.1	RRM_RBM8	89..176	CDD:409762	23/87 (26%)