Protein Alignment sqd and RBP47A

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001321909.1
• Gene: RBP47A / 841384
• AraportID: AT1G49600
• Length: 450
• Species: Arabidopsis thaliana
• Alignment Length: 238
• Identity: 55/238 - (23%)
• Similarity: 95/238 - (39%)
• Gaps: 72/238 - (30%)

  Fly     4 NKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETT 68
            |.:....:|...|:   |.:...||||                       .|..:|||.|:.:.:
plant   187 NAEQPFRLNWASFS---TGEKRASENG-----------------------PDLSIFVGDLAPDVS 225

  Fly    69 EKELRDHF-GKYGEIESINVKTDPQTGRSRGFAFIVF----TNTEAIDKVSAADEHIINSKKV-- 126
            :..|.:.| |:|..::...|..|..||||:|:.|:.|    ..:.|:.:::.|   ..:|:::
plant   226 DAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGA---FCSSRQMRV 287

  Fly   127 ---DPKKAKA--------------RHG-------------KIFVGGLTTEISDEEIKTYFGQFGN 161
               .||:|.|              .||             .||||||..::::|::...|..||.
plant   288 GIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGE 352

  Fly   162 IVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGK 204
            :|.|::|..      ||..|:.|.:.|...:.:......:.||
plant   353 VVSVKIPVG------KGCGFVQFANRQSAEEAIGNLNGTVIGK 389

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	20/80 (25%)
		RRM2_hnRNPD_like	137..211	CDD:240775	20/68 (29%)
RBP47A	NP_001321909.1	RRM1_SECp43_like	120..200	CDD:409780	2/12 (17%)
		RRM2_SECp43_like	212..291	CDD:409781	21/81 (26%)
		RRM_SF	326..397	CDD:473069	20/70 (29%)