Protein Alignment sqd and AT1G20880

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_564127.1
• Gene: AT1G20880 / 838681
• AraportID: AT1G20880
• Length: 274
• Species: Arabidopsis thaliana
• Alignment Length: 275
• Identity: 71/275 - (25%)
• Similarity: 94/275 - (34%)
• Gaps: 80/275 - (29%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |:|||||:|||..:.||.||.:||:|....|.||..||||:|:.|:.|.:.||..:..
plant    25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC------- 82

  Fly   122 NSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 186
                |||                |.|.|       |:..|.....:...:...|   :..|....
plant    83 ----VDP----------------TPIID-------GRRANCNLASLGRSRPPMQ---YAVIPHAP 117

  Fly   187 EQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQ 251
            .:|                        :|.:..:|.:: .|| |:..|...|.....||.|....
plant   118 GRV------------------------RPPSPYVGSVQ-SPR-GLHFGSHPYHQPPTYNYQQGVV 156

  Fly   252 GSYG--GYGGGY-GGYGAGGYGDYYAGGYYN-----------GYDYGYDGY---GYGGGFEGNGY 299
            ..||  .||..| .....|.||.|....|..           ||.||...:   |..|...|.||
plant   157 YPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGY 221

  Fly   300 GGGGGGNMGGGRGGP 314
            ...|...:..|...|
plant   222 SHPGSHVLQLGATSP 236

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	29/70 (41%)
		RRM2_hnRNPD_like	137..211	CDD:240775	8/73 (11%)
AT1G20880	NP_564127.1	RRM_RBM24_RBM38_like	24..99	CDD:409818	36/107 (34%)
		PABP-1234	<37..246	CDD:130689	62/263 (24%)