Protein Alignment sqd and SR30

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_172386.3
• Gene: SR30 / 837433
• AraportID: AT1G09140
• Length: 268
• Species: Arabidopsis thaliana
• Alignment Length: 178
• Identity: 42/178 - (23%)
• Similarity: 72/178 - (40%)
• Gaps: 41/178 - (23%)

  Fly    55 DRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVSAADE 118
            :|.::||.|..:..:.|:.|.|.|||.|..|::|..|   |..|:||:.|.: .:|.|.:...|.
plant     6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAIYGRDG 67

  Fly   119 HIIN---------------SKKVD-------PKKAKARHG--KIFVGGLTTEISDEEIKTYFGQF 159
            :..:               |..||       ..:|.:|..  ::.|.||....|.:::|.:..:.
plant    68 YDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKA 132

  Fly   160 GNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVD 207
            |::.     |.:....|||.        ..|.|.......|.|.:::|
plant   133 GDVC-----FSEVFPDRKGM--------SGVVDYSNYDDMKYAIRKLD 167

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	24/93 (26%)
		RRM2_hnRNPD_like	137..211	CDD:240775	15/71 (21%)
SR30	NP_172386.3	RRM_SF	8..79	CDD:473069	21/73 (29%)
		RRM2_SF2_plant_like	109..184	CDD:410014	15/72 (21%)