DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqd and AT5G55550

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001331843.1 Gene:AT5G55550 / 835649 AraportID:AT5G55550 Length:507 Species:Arabidopsis thaliana


Alignment Length:408 Identity:108/408 - (26%)
Similarity:147/408 - (36%) Gaps:134/408 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |||:||:||:|.|:.|||:|..||::....:..|..|||:|||.||||.:....::| ..|:|||
plant     7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHII 70

  Fly   122 NSK-----------------------------------------------KVDPKKAKAR----- 134
            :.:                                               :|:.|||..|     
plant    71 DGRTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPRDDQQV 135

  Fly   135 --------------HG------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGF 179
                          ||      |||||||.:.|::||.|.||.|||.|.:|.:.:|....:.:||
plant   136 LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGF 200

  Fly   180 CFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK---PENQMMGGMRGGPRGGMRGGRGGYGGR 241
            .||||||:..|..:|.....::.||.|:||||.||   |.:.:...:..|...|  ||.......
plant   201 GFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYG--GGSNRMPAN 263

  Fly   242 GGYNNQWDGQGSYGGYG--------------GGYGGYGAG--------------------GYGDY 272
            ..:||...|.|.|...|              .....:|.|                    ||...
plant   264 SYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRI 328

  Fly   273 YAGGYYNGYDYGYDGYGYGGGFEGNGYG-------------GGGGGNMGGGRGGPRGGGG----- 319
            .:..|:||..........|.....:.|.             .|.|.|:....|..||..|     
plant   329 PSNPYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSS 393

  Fly   320 ----PKGGGGFNGGKQRG 333
                ...|.|.|.|...|
plant   394 AVSNDNNGFGRNYGTSSG 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 31/117 (26%)
RRM2_hnRNPD_like 137..211 CDD:240775 34/73 (47%)
AT5G55550NP_001331843.1 RRM1_hnRNPA_hnRNPD_like 8..75 CDD:409763 30/67 (45%)
ELAV_HUD_SF 19..>329 CDD:273741 83/312 (27%)
RRM2_Hrp1p 158..235 CDD:409767 36/76 (47%)

Return to query results.
Submit another query.