Protein Alignment sqd and PABN1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001190511.1
• Gene: PABN1 / 835186
• AraportID: AT5G51120
• Length: 265
• Species: Arabidopsis thaliana
• Alignment Length: 246
• Identity: 57/246 - (23%)
• Similarity: 105/246 - (42%)
• Gaps: 41/246 - (16%)

  Fly     6 QVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEK 70
            ::..|..||..|::....|     |:.|||.   |..:.:..:|.:..:|.|..:         |
plant    15 EIPEEEEGEMDTEEYEEHG-----GEEGAAA---GDEELEPGSSSRDLEDMKKRI---------K 62

  Fly    71 ELRDHFGKYGEIESINVKTDPQTGRSRG-----------FAFIVFTNTEAIDKVS-----AADEH 119
            |:.:..|...|:::   |.:...|.|:|           :.:|:.:.:|:::...     ..::.
plant    63 EIEEEAGALREMQA---KAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

  Fly   120 IINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF 184
            ||||.....:|.:.....|:||.:....:.||::.:|...|.:..|.:..|| ..|.|||.::.|
plant   125 IINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEF 188

  Fly   185 DSEQVVTDLLKTPKQKIAGKEVDV--KRATPKPENQMMGGMRGGPRGGMRG 233
            ...:.|.:.|...:.::.|:::.|  ||.......|..|  ||.|...|||
plant   189 VEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRG--RGRPFRPMRG 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	14/86 (16%)
		RRM2_hnRNPD_like	137..211	CDD:240775	20/75 (27%)
PABN1	NP_001190511.1	SF-CC1	<56..>213	CDD:273721	35/169 (21%)
		RRM_II_PABPs	142..213	CDD:409747	18/71 (25%)