Protein Alignment sqd and AT5G19350

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_197436.1
• Gene: AT5G19350 / 832055
• AraportID: AT5G19350
• Length: 425
• Species: Arabidopsis thaliana
• Alignment Length: 312
• Identity: 74/312 - (23%)
• Similarity: 119/312 - (38%)
• Gaps: 88/312 - (28%)

  Fly    46 SAASGQRDD---DRKLFVGGLSWETTEKELRDHFG-KYGEIESINVKTDPQTGRSRGFAFIVFTN 106
            |..|||:.|   |..:|||.|:.:.|:..|::.|. .|..:....|.|||.||||:|:.|:.|..
plant   103 SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167

  Fly   107 TEAID----------------KVSAA---------DEHIINS---------------KKVDPKKA 131
            ....:                ::|||         .:::..:               ..|.|.::
plant   168 ESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPES 232

  Fly   132 KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
            ......|.|..|...:::||:|..|.|.|.::.|::|      ..||:.::.|.:.....:.::.
plant   233 DVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSAEEAVQR 291

  Fly   197 PKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGY 261
            .:.::.|::. |:.:..|...|.....:..|                  |||:|   |.|||.||
plant   292 MQGQVIGQQA-VRISWSKNPGQDGWVTQADP------------------NQWNG---YYGYGQGY 334

  Fly   262 GGYGAGGYGDYYAGGYYNGYDYGYDGYGY------GGGFE--GNGYGGGGGG 305
            ..|..|...|...        |.|.||||      |.|.:  .|...||..|
plant   335 DAYAYGATQDPSV--------YAYGGYGYPQYPQQGEGTQDISNSAAGGVAG 378

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	23/111 (21%)
		RRM2_hnRNPD_like	137..211	CDD:240775	16/73 (22%)
AT5G19350	NP_197436.1	RRM1_SECp43_like	25..105	CDD:409780	1/1 (100%)
		RRM2_SECp43_like	115..194	CDD:409781	22/78 (28%)
		RRM_SF	237..306	CDD:473069	16/75 (21%)