DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and AT4G36960

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_568011.1 Gene:AT4G36960 / 829850 AraportID:AT4G36960 Length:379 Species:Arabidopsis thaliana


Alignment Length:381 Identity:99/381 - (25%)
Similarity:143/381 - (37%) Gaps:94/381 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 DRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEH 119
            :|||.|.|:.|:.....|:|:..|:|::|...|..|..|||||||.::.|.:.|.. |.:...||
plant     2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA-KNALKGEH 65

  Fly   120 -----IINSKKVDPKKAKARHGK----IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQ 175
                 |:..|...||:...:..|    |||..:.:.:|:.:.:::|.::|.|.::.||.|....|
plant    66 FLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130

  Fly   176 RKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK----PENQMMGGMRGGPRGGMRGGRG 236
            .:|..||||.|...|.||:: ....:.|..|.|.|||||    |...........|...:.||.|
plant   131 HRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFG 194

  Fly   237 GYGGRGGYNNQWDGQGSYGGYGGG--YGG----YGAG-----GYG------------------DY 272
            ..||.|.|:........|...|..  |..    ||.|     |.|                  ||
plant   195 APGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDY 259

  Fly   273 YA--GGYYNGY------DYGYDGYGYGGGFEGNGYGGG--------GGGNMGGGRGGPRGGGGPK 321
            :.  |...:.|      ..|:.|:|: ..|..||....        .|..:......|....||.
plant   260 FGRFGHIQDAYIPKDPKRSGHRGFGF-VTFAENGVADRVARRSHEICGQEVAIDSATPLDEAGPS 323

  Fly   322 GG-------------GGFNG-----GKQRGG---------------GGRQQRHQPY 344
            .|             ||:.|     |:..||               ....:|::||
plant   324 AGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWGYGMPNARPSRPDRRYRPY 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 25/75 (33%)
RRM2_hnRNPD_like 137..211 CDD:240775 24/77 (31%)
AT4G36960NP_568011.1 RRM_SF 4..77 CDD:473069 26/73 (36%)
PABP-1234 5..>378 CDD:130689 95/375 (25%)
RRM_SF 91..166 CDD:473069 24/75 (32%)

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