Protein Alignment sqd and AT4G35785

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_974690.4
• Gene: AT4G35785 / 829732
• AraportID: AT4G35785
• Length: 239
• Species: Arabidopsis thaliana
• Alignment Length: 155
• Identity: 33/155 - (21%)
• Similarity: 78/155 - (50%)
• Gaps: 16/155 - (10%)

  Fly    38 TNGSSDNQSAASGQ-RDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAF 101
            :.|.|.::|....: .:....|:|.|||...|:|:|..||.|.|::.|..:..:|:|..||||||
plant    53 SRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAF 117

  Fly   102 IVFTNTEAIDK-VSAADEHIINSKKVDPKKAKARHGKI-----FVGGLTTEISDEEIKTYFGQFG 160
            :..::.:..:: :...::.::..:.:..::::.:..:.     ::|..::..||.|.::..|:..
plant   118 VTMSSLKDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDSDREGRSSRGRHY 182

  Fly   161 NIVEVE---------MPFDKQKSQR 176
            :..:..         .|.|:::|:|
plant   183 DRDDYRDRRSPRRDYSPRDERRSRR 207

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	21/71 (30%)
		RRM2_hnRNPD_like	137..211	CDD:240775	9/54 (17%)
AT4G35785	NP_974690.4	RRM	71..154	CDD:440488	21/82 (26%)