Protein Alignment sqd and ATRBP45C

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_567764.1
• Gene: ATRBP45C / 828808
• AraportID: AT4G27000
• Length: 415
• Species: Arabidopsis thaliana
• Alignment Length: 292
• Identity: 77/292 - (26%)
• Similarity: 119/292 - (40%)
• Gaps: 74/292 - (25%)

  Fly    40 GSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHF-GKYGEIESINVKTDPQTGRSRGFAFIV 103
            |:.:.:.|    ...:..:|||.|:.:.|:..|.:.| ..|..::...|..|..||||:|:.|:.
plant   161 GAGERRQA----EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVR 221

  Fly   104 FTN-TEAIDKVS----------------AADEHIINSKKVDPKKAKARHGK-------IFVGGLT 144
            |.: :|.|..::                ||::..:..:....:..:...|:       ||||.:.
plant   222 FADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVD 286

  Fly   145 TEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVK 209
            ..::::::|:.|||||.:|.|::|..|    |.||                            |:
plant   287 QSVTEDDLKSVFGQFGELVHVKIPAGK----RCGF----------------------------VQ 319

  Fly   210 RATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWD-GQGSYGGYGGGYGGYGAGGYGDYY 273
            .|......|.:..:.|...|| :..|..: ||...|.|.. .|..||| ||||.||...||..|
plant   320 YANRACAEQALSVLNGTQLGG-QSIRLSW-GRSPSNKQTQPDQAQYGG-GGGYYGYPPQGYEAY- 380

  Fly   274 AGGYY------NGYDYGYDGYGYGGGFEGNGY 299
              ||.      |.|..||.|.|||...:..||
plant   381 --GYAPPPQDPNAYYGGYAGGGYGNYQQPGGY 410

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	21/88 (24%)
		RRM2_hnRNPD_like	137..211	CDD:240775	18/80 (23%)
ATRBP45C	NP_567764.1	RRM1_SECp43_like	81..158	CDD:409780
		RRM2_SECp43_like	172..251	CDD:409781	19/78 (24%)
		RRM_SF	277..348	CDD:473069	24/104 (23%)