Protein Alignment sqd and AT3G14100

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_188026.1
• Gene: AT3G14100 / 820626
• AraportID: AT3G14100
• Length: 427
• Species: Arabidopsis thaliana
• Alignment Length: 189
• Identity: 48/189 - (25%)
• Similarity: 75/189 - (39%)
• Gaps: 52/189 - (27%)

  Fly    44 NQSAASGQRDDDR---KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFT 105
            |.:.|:|||:|..   .:|||.||.|.|:..|...|..:.......|..|.:|||||||.|:.|.
plant   129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193

  Fly   106 N------------------------------TEAIDKVSAADEHII---NSKKVDPKKA------ 131
            |                              |...||:|:..:.::   .....|.|:.
plant   194 NQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETP 258

  Fly   132 --KARHGKIFVGGLTTEISDEEIKTYFGQFGN--IVEVEMPFDKQKSQRKGFCFITFDS 186
              .::...::||.|..|::..::..||...|.  |.||.:..|      |||.|:.:::
plant   259 ENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD------KGFGFVRYNT 311

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	26/103 (25%)
		RRM2_hnRNPD_like	137..211	CDD:240775	15/52 (29%)
AT3G14100	NP_188026.1	RRM1_PUB1	61..131	CDD:410026	1/1 (100%)
		RRM2_PUB1	143..222	CDD:410031	21/78 (27%)
		RRM_SF	265..341	CDD:473069	15/53 (28%)