Protein Alignment sqd and AT3G13224

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_683559.2
• Gene: AT3G13224 / 820515
• AraportID: AT3G13224
• Length: 358
• Species: Arabidopsis thaliana
• Alignment Length: 363
• Identity: 134/363 - (36%)
• Similarity: 177/363 - (48%)
• Gaps: 71/363 - (19%)

  Fly    42 SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN 106
            |.|.:..||......|:|:|||..:||......||||||||....:..|..||:.|||.||.|.:
plant     5 SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69

  Fly   107 TEAIDKVSAADEHIINSKKVD-----PKKAKARHG------KIFVGGLTTEISDEEIKTYFGQFG 160
            ...:||| ..|.|:||.|:|:     ||.|.....      ||||||:.:.::::|:|.:|.::|
plant    70 PSVVDKV-IEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133

  Fly   161 NIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPK---------- 214
            |:||.::..|.:.::.:||.|:.||||:||.:|| |.....:|..:|::|:|.||
plant   134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSY 198

  Fly   215 ---PENQMMG---GMRGGPRGGMRGGRG-------GYGG-----RGGYNNQWDGQGSYG-GYGGG 260
               |..:...   ...|||.||..||.|       .:||     .|||..   |:||.| .:|||
plant   199 GSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGY---GRGSVGPEFGGG 260

  Fly   261 YGGYGAGGYGDYYAGGYYNGYDYGYDG-YG-YGGGFEGNGYGGGG---------GGNMG-GGRGG 313
            |..||.|.     .|||.|....||.. :| ||.||.|.|||.||         ||..| ||.||
plant   261 YNNYGGGS-----LGGYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGG 320

  Fly   314 PRGGGGPKGGGGFNGGKQRGGGG-------RQQRHQPY 344
            |..||..:.||  .||...|.||       ...|:.||
plant   321 PGYGGAYESGG--PGGSYEGAGGPYGRGYSSSSRYHPY 356

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	32/75 (43%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/74 (39%)
AT3G13224	NP_683559.2	RRM_SF	21..91	CDD:418427	32/70 (46%)
		RRM_SF	110..188	CDD:418427	30/77 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48033
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.010