DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and SLIRP

DIOPT Version :9

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_112487.1 Gene:SLIRP / 81892 HGNCID:20495 Length:109 Species:Homo sapiens


Alignment Length:127 Identity:32/127 - (25%)
Similarity:55/127 - (43%) Gaps:24/127 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 AAGSTNGS-----SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
            ||.:..|:     |.||..|          ||..:.|.....:|::||.::|.:....:..|.:|
Human     2 AASAARGAAALRRSINQPVA----------FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKET 56

  Fly    94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTY 155
            |..||..::.|::.|.:......:.|||:..||   :...|..|:      .:.||:|.|.:
Human    57 GFHRGLGWVQFSSEEGLRNALQQENHIIDGVKV---QVHTRRPKL------PQTSDDEKKDF 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM_SF 58..129 CDD:302621 19/70 (27%)
RRM2_hnRNPD_like 137..211 CDD:240775 5/19 (26%)
SLIRPNP_112487.1 RRM_SLIRP 20..92 CDD:409688 20/84 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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