Protein Alignment sqd and AT2G37220

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_181259.1
• Gene: AT2G37220 / 818299
• AraportID: AT2G37220
• Length: 289
• Species: Arabidopsis thaliana
• Alignment Length: 234
• Identity: 57/234 - (24%)
• Similarity: 101/234 - (43%)
• Gaps: 52/234 - (22%)

  Fly    20 VTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIES 84
            :|::....|:|.|..|     ....||.::     |.|||||.|.:.....:|...|...|.:|.
plant    65 ITSEFEVEEDGFADVA-----PPKEQSFSA-----DLKLFVGNLPFNVDSAQLAQLFESAGNVEM 119

  Fly    85 INVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG------------- 136
            :.|..|..|||||||.|:..:   ::.:|.||.:. .|..::|.:..:...|
plant   120 VEVIYDKITGRSRGFGFVTMS---SVSEVEAAAQQ-FNGYELDGRPLRVNAGPPPPKREDGFSRG 180

  Fly   137 ------------------------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRK 177
                                    :::||.|:..:.|..:::.|.:.|.:||..:.:|:...:.|
plant   181 PRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245

  Fly   178 GFCFITFDSEQVVTDLLKT-PKQKIAGKEVDVKRATPKP 215
            ||.|:|:||.|.|.:.:|: ....:.|:::.|..|..:|
plant   246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	24/70 (34%)
		RRM2_hnRNPD_like	137..211	CDD:240775	21/74 (28%)
AT2G37220	NP_181259.1	RRM_SF	92..170	CDD:473069	26/81 (32%)
		RRM	204..287	CDD:440488	23/81 (28%)