Protein Alignment sqd and Cirbp

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_038935873.1
• Gene: Cirbp / 81825
• RGDID: 620756
• Length: 176
• Species: Rattus norvegicus
• Alignment Length: 258
• Identity: 76/258 - (29%)
• Similarity: 95/258 - (36%)
• Gaps: 109/258 - (42%)

  Fly    54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVSAAD 117
            |:.||||||||::|.|:.|...|.|||:|..:.|..|.:|.|||||.|:.|.| .:|.|.:.|
  Rat     4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA-- 66

  Fly   118 EHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFI 182
               :|.|.||
  Rat    67 ---MNGKSVD------------------------------------------------------- 73

  Fly   183 TFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGG---MRGGRG-GYG-GRG 242
                                |:::.|.:|....:|:.. |.|||..||   .||||. |.| .||
  Rat    74 --------------------GRQIRVDQAGKSSDNRSR-GYRGGSAGGRGFFRGGRSRGRGFSRG 117

  Fly   243 GYNNQWDGQGSYGGYGGGYGGYGAGGYG---DYYA----GGYY------NGYDYGYDGYGYGG 292
            |.:.         |||||.....:||||   ||||    ||.|      ..|...||.||..|
  Rat   118 GGDR---------GYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGGSYRDSYDSYGKSG 171

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	33/71 (46%)
		RRM2_hnRNPD_like	137..211	CDD:240775	2/73 (3%)
Cirbp	XP_038935873.1	RRM_CIRBP_RBM3	6..85	CDD:409883	37/158 (23%)