Protein Alignment sqd and AT2G35410

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_181084.1
• Gene: AT2G35410 / 818107
• AraportID: AT2G35410
• Length: 308
• Species: Arabidopsis thaliana
• Alignment Length: 199
• Identity: 48/199 - (24%)
• Similarity: 86/199 - (43%)
• Gaps: 44/199 - (22%)

  Fly    41 SSDNQSAASGQRDD------DRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGF 99
            |:|.:::...:.::      .|||||..|.|..:..::.:.||:.|.:.::.: ...:.|::|||
plant    74 SADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI-IRQKDGKNRGF 137

  Fly   100 AFIVFTNTE----AIDKVSA--ADEHIIN------SKKVDPKK---------AKARHGKIFVGGL 143
            ||:...:.|    ||||...  ....||:      .||..||.         ...|| |::|..|
plant   138 AFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRH-KLYVSNL 201

  Fly   144 TTEISDEEIKTYF--GQFGNIVEVEMPFDKQKSQRKGFCFITF----DSEQVVTDLLKTPKQKIA 202
            ..:.....::..|  ..| |.|...:.|...:.:..|:.|::|    ::|..:|        |:.
plant   202 AWKARSTHLRELFTAADF-NPVSARVVFADPEGRSSGYGFVSFATREEAENAIT--------KLN 257

  Fly   203 GKEV 206
            |||:
plant   258 GKEI 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	23/82 (28%)
		RRM2_hnRNPD_like	137..211	CDD:240775	17/76 (22%)
AT2G35410	NP_181084.1	RRM	96..171	CDD:440488	22/75 (29%)
		PABP-1234	97..>279	CDD:130689	44/176 (25%)