Protein Alignment sqd and AT2G21690

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_179762.1
• Gene: AT2G21690 / 816707
• AraportID: AT2G21690
• Length: 117
• Species: Arabidopsis thaliana
• Alignment Length: 116
• Identity: 35/116 - (30%)
• Similarity: 55/116 - (47%)
• Gaps: 14/116 - (12%)

  Fly    59 FVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI-DKVSAADEHIIN 122
            ||.||..:|.||:|.|.|.|:|.:....:..|..||:||.|.|:.|...::: |.:...|.....
plant    10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMDVEESR 74

  Fly   123 SKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQK 173
            ||.|:            ||.:|.|::.:..|....:|. :..|.:..:|||
plant    75 SKCVN------------VGSITVEVARQRRKNRSAEFA-LELVRLINEKQK 112

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	25/70 (36%)
		RRM2_hnRNPD_like	137..211	CDD:240775	10/37 (27%)
AT2G21690	NP_179762.1	RRM	8..80	CDD:214636	25/81 (31%)