Protein Alignment sqd and tia1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_997793.1
• Gene: tia1 / 793165
• ZFINID: ZDB-GENE-030131-1506
• Length: 386
• Species: Danio rerio
• Alignment Length: 304
• Identity: 69/304 - (22%)
• Similarity: 120/304 - (39%)
• Gaps: 67/304 - (22%)

  Fly    46 SAASGQRDDDRK---LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT 107
            ::.|.|:.|...   :|||.||.|.|..::|..|..:|.|....|..|..||:|:|:.|:.|.|.
Zfish    83 TSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 147

  Fly   108 -EAIDKVSAADEHIINSKKV-------DPKKAKARHG--------------------KIFVGGLT 144
             :|.:.:.......:..:::       .|...||.:.                    .::.||:|
Zfish   148 WDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVT 212

  Fly   145 TEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVD-- 207
            |.::::.::..|..||.|:||.:..|      ||:.|:.|:|.:.....:.:    :.|..::
Zfish   213 TGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFNSHESAAHAIVS----VNGTSLEGH 267

  Fly   208 -VKRATPKPENQMMGGMR--GGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGY 269
             ||....|....|:..|:  ..|:          ..:.|:..|     .||.:|..||  .|...
Zfish   268 IVKCYWGKETTDMVSPMQQVQVPQ----------QSKVGFAAQ-----PYGQWGQWYG--NAQQI 315

  Fly   270 GDYYAGGY----YNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGG 309
            ..|...|:    |..|...::..|:.....|.|:.|.|..:.||
Zfish   316 SQYVPNGWQVPTYGVYGQAWNQQGFNHLQAGAGWAGVGAVSNGG 359

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	21/78 (27%)
		RRM2_hnRNPD_like	137..211	CDD:240775	19/76 (25%)
tia1	NP_997793.1	RRM1_TIA1	9..82	CDD:410027
		RRM2_TIA1	94..171	CDD:410030	21/76 (28%)
		RRM3_TIA1	204..275	CDD:410032	19/80 (24%)