Protein Alignment sqd and Hnrnpd

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_077380.2
• Gene: Hnrnpd / 79256
• RGDID: 620365
• Length: 353
• Species: Rattus norvegicus
• Alignment Length: 312
• Identity: 123/312 - (39%)
• Similarity: 174/312 - (55%)
• Gaps: 36/312 - (11%)

  Fly     2 AENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWE 66
            ||..::|...|.||                   .|.:|.|..:..||:.|| ::.|:|:|||||:
  Rat    61 AEGAKIDASKNEED-------------------EGHSNSSPRHTEAATAQR-EEWKMFIGGLSWD 105

  Fly    67 TTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
            ||:|:|:|:|.|:|::....:|.||.|||||||.|::|..:|::|||....||.:|.|.:|||:|
  Rat   106 TTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170

  Fly   132 KARH-----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVT 191
            ||..     .|||||||:.:..:|:|:.|||.||.:..:|:|.|.:.::|:|||||||..|:.|.
  Rat   171 KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 235

  Fly   192 DLLKTPKQKIAGKEVDVKRATPKP--ENQMMGGMRGGPRGGMRGGRGG--YGGRGGYNNQWD-GQ 251
            .:::.....:...:.::|.|..|.  :.|...|.|||..|..||..||  .....||:|.|: |.
  Rat   236 KIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGY 300

  Fly   252 GSYG----GYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGY 299
            ||||    || ||||||...||..||..|.|:....||......||.: |.|
  Rat   301 GSYGYNSQGY-GGYGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRGGHQ-NSY 350

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	35/70 (50%)
		RRM2_hnRNPD_like	137..211	CDD:240775	28/73 (38%)
Hnrnpd	NP_077380.2	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..89		10/46 (22%)
		CBFNT	<55..76	CDD:311868	6/33 (18%)
		RRM1_hnRNPD	97..170	CDD:410150	37/72 (51%)
		RRM2_hnRNPD	181..255	CDD:241027	28/73 (38%)