Protein Alignment sqd and Hnrnpa0

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_084148.1
• Gene: Hnrnpa0 / 77134
• MGIID: 1924384
• Length: 305
• Species: Mus musculus
• Alignment Length: 311
• Identity: 124/311 - (39%)
• Similarity: 161/311 - (51%)
• Gaps: 54/311 - (17%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |||:|||:.:|:|..||.||..:|.:....|..:|||.|||.|.|:.::|.|..|...||..|.:
Mouse     8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAV 72

  Fly   122 NSKKVDPKKA-----KARHG------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQ 175
            :...|:.|:|     .||.|      |:|||||..::::.::..:|.|||.:.:.|:..|||..:
Mouse    73 DGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGK 137

  Fly   176 RKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGG----MRGGPRGGM-RGGR 235
            ::||.|:.|.|..............|.|..|:||:|.||.:....||    .|||..||. |||.
Mouse   138 KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGGRGGGRGRGGG 202

  Fly   236 GGYGGR-------------GGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDG 287
            ||.|||             ||||       ||||| ||||.||.||.|    ||.|.|.||| :|
Mouse   203 GGGGGRDQNGLAKGGGGGGGGYN-------SYGGY-GGYGAYGGGGGG----GGSYGGSDYG-NG 254

  Fly   288 YGYGGGFE---------GNGYGGGGGGNMGG-GRGGP-RGG-GGPKGGGGF 326
            :|..|.:.         .:|.||||||:.|| ...|| ||| ||..|||.|
Mouse   255 FGGFGSYSQHQSSYGPMKSGGGGGGGGSWGGRSNSGPYRGGYGGGYGGGSF 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	28/70 (40%)
		RRM2_hnRNPD_like	137..211	CDD:240775	24/73 (33%)
Hnrnpa0	NP_084148.1	RRM1_hnRNPA0	5..83	CDD:409764	30/74 (41%)
		RRM_SF	99..178	CDD:473069	27/78 (35%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	178..211		15/32 (47%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	265..305		19/39 (49%)