DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and Msi2

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:XP_006534494.1 Gene:Msi2 / 76626 MGIID:1923876 Length:378 Species:Mus musculus


Alignment Length:380 Identity:119/380 - (31%)
Similarity:160/380 - (42%) Gaps:99/380 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
            ||..|.:||.|.|          :.|..|:|:|||||:|:...|||:|.|:|||....|..||.|
Mouse     4 NGSPGTSGSANDS----------QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTT 58

  Fly    94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPK-------------------------KAKA 133
            .|||||.|:.|.:..::|||.....|.::||.:|||                         :|:|
Mouse    59 KRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKSQEQGGSWKRTWTTVQARA 123

  Fly   134 RHG--------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVV 190
            ..|        |||||||:.....|::|.||.|||.:.:..:.|||..::.:||.|:||::|.||
Mouse   124 ASGDQMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV 188

  Fly   191 TDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRG----------GMRGGRGGYGGRGGYN 245
            ..:.:....:|..|.|:.|:|.|| |.....|.||..||          ||        |..||.
Mouse   189 EKVCEIHFHEINNKMVECKKAQPK-EVMFPPGTRGRARGLPYTMDAFMLGM--------GMLGYP 244

  Fly   246 N--QWDGQGSYGGYGGGYG------------GYGAGGYGDYYA-------GGYYNGY----DYGY 285
            |  ...|:| |.|:...||            .:.|..||...|       |...|.|    ::|.
Mouse   245 NFVATYGRG-YPGFAPSYGYQFPALLPYLNASFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGA 308

  Fly   286 DGYGYG------GGFEGNGYGGG-----GGGNMGGGRGGPRGGGGPKGGGGFNGG 329
            .....|      |||.|....|.     |..:...|.|.......|:.|.||..|
Mouse   309 PASPAGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHG 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 33/70 (47%)
RRM2_hnRNPD_like 137..211 CDD:240775 29/73 (40%)
Msi2XP_006534494.1 RRM_SF 17..104 CDD:473069 37/86 (43%)
PABP-1234 <35..363 CDD:130689 102/337 (30%)
RRM2_MSI 135..208 CDD:240769 28/72 (39%)

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