Protein Alignment sqd and Snrnp35

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_083808.1
• Gene: Snrnp35 / 76167
• MGIID: 1923417
• Length: 244
• Species: Mus musculus
• Alignment Length: 179
• Identity: 45/179 - (25%)
• Similarity: 79/179 - (44%)
• Gaps: 30/179 - (16%)

  Fly    25 PGSENGDAGAAGSTNGSSDNQSAASGQR--------------DDDRKLFVGGLSWETTEKELRDH 75
            |.::..|...|||.:|:.::....:..|              |....|||..|:.:|.|::|::.
Mouse     6 PIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVTGDPLLTLFVARLNLQTKEEKLKEV 70

  Fly    76 FGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV-SAADEHIINSKK--VDPKKAKARHGK 137
            |.:||:|..:.:..|..||.|:|:|||.:....|:.|. ..||..:|:..:  ||.:..:...|.
Mouse    71 FSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLRGW 135

  Fly   138 I---FVGGLTTEISDEEIKTYFGQFGN-----IVEVEMPFDKQKSQRKG 178
            |   ..|||..:....:::     ||.     ...:.:|..|.:..|:|
Mouse   136 IPRRLGGGLGGKKESGQLR-----FGGRDRPFRKPINLPVVKNEPHREG 179

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	26/73 (36%)
		RRM2_hnRNPD_like	137..211	CDD:240775	10/50 (20%)
Snrnp35	NP_083808.1	RRM_snRNP35	47..137	CDD:409683	28/89 (31%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	146..244		6/39 (15%)