Protein Alignment sqd and hnrnpa3

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001315077.1
• Gene: hnrnpa3 / 751729
• ZFINID: ZDB-GENE-060224-1
• Length: 340
• Species: Danio rerio
• Alignment Length: 338
• Identity: 129/338 - (38%)
• Similarity: 175/338 - (51%)
• Gaps: 43/338 - (12%)

  Fly    45 QSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEA 109
            :|..|.:.:..||||:||||:||||..||.||.::|::....|..||...|||||.|:.:::...
Zfish     2 ESRDSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSE 66

  Fly   110 IDKVSAADEHIINSKKVDPKKAKARHG-----------KIFVGGLTTEISDEEIKTYFGQFGNIV 163
            :|....|..|.::.:.|:||:|.:|..           ||||||:..:..:..|:.||..:|.|.
Zfish    67 VDAAMTARPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIE 131

  Fly   164 EVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGM--RGG 226
            .:::..::...:::||||:|||....|..::......|.....:|::|.||.|.|.....  |||
Zfish   132 TIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQEMQSSSNQRYRGG 196

  Fly   227 PRGGMRG-----GRGGY-GGRG---GYNNQWDGQ--GSYGGYGGGYGGYGAG-GYGDYYAGGYYN 279
            ..|...|     ||||| ||||   |||. :.|.  |..||||||.||||.| |||:...||.:.
Zfish   197 GGGNFTGRGGNFGRGGYGGGRGGGDGYNG-FGGNYGGGPGGYGGGRGGYGGGPGYGNQGGGGGFG 260

  Fly   280 GYDYGYDGYGYGGGFEGNG--YGGGGGGNMG--GGRGGPR-----------GG--GGPKGGGGFN 327
            |:|...|...:||.|.|.|  .|||||||..  |..||.:           ||  .||.||||:.
Zfish   261 GFDNYNDRGNFGGNFGGGGGSSGGGGGGNYNDFGNYGGQQSNFGPMKGNNFGGRNSGPYGGGGYG 325

  Fly   328 GGKQRGGGGRQQR 340
            .|...||||...|
Zfish   326 SGGGGGGGGYGSR 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	28/70 (40%)
		RRM2_hnRNPD_like	137..211	CDD:240775	21/73 (29%)
hnrnpa3	NP_001315077.1	RRM1_hnRNPA_like	14..91	CDD:409992	32/76 (42%)
		RRM2_hnRNPA3	104..183	CDD:409996	23/78 (29%)
		HnRNPA1	292..>315	CDD:463312	5/22 (23%)