DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and TIAL1

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001029097.1 Gene:TIAL1 / 7073 HGNCID:11804 Length:392 Species:Homo sapiens


Alignment Length:382 Identity:85/382 - (22%)
Similarity:129/382 - (33%) Gaps:125/382 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 DDD---RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGR----SRGFAFIVFTNTEAI 110
            :||   |.|:||.||.:.||..:...|.:.|..:|..:.|:....|    |.||:.:..|:.:..
Human     3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPY 67

  Fly   111 -------DKVSAADEHIINSKKV--------------DPKKAKARHGKIFVGGLTTEISDEEIKT 154
                   .:.:||....:|.:|:              ..||..:.|..:|||.|:.||:.|:||:
Human    68 CFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 132

  Fly   155 YFGQFGNIVEVEMPFDKQKSQRKGFCFITF----DSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
            .|..||.|.:..:..|....:.||:.|::|    |:|..:..:   ..|.:.|:::....||.||
Human   133 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM---GGQWLGGRQIRTNWATRKP 194

  Fly   216 -------ENQ--------------------MMGGMRGG----------------------PRGGM 231
                   ||.                    ..||:..|                      |..|.
Human   195 PAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 259

  Fly   232 RGGRGG------------------------YGGRGG----YNNQWDGQGSYGGYGGGYGGYGAGG 268
            ...|..                        |.|:..    .|.|......:|.:...||  ....
Human   260 SFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYG--NPQQ 322

  Fly   269 YGDYYAGGYYNGYDYGYDGYG-YGGGFEGNGYG---GGGGGNMGG-GRGGPRGGGGP 320
            ||.|.|.|:.      ...|| ||..:...|:|   ......||| |...|:|...|
Human   323 YGQYMANGWQ------VPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPP 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 20/95 (21%)
RRM2_hnRNPD_like 137..211 CDD:240775 22/77 (29%)
TIAL1NP_001029097.1 RRM1_TIAR 10..107 CDD:410028 20/96 (21%)
RRM2_TIAR 113..192 CDD:410029 24/81 (30%)
RRM3_TIAR 222..294 CDD:241064 8/71 (11%)

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