Protein Alignment sqd and Hnrnpa0

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001387712.1
• Gene: Hnrnpa0 / 681410
• RGDID: 1563684
• Length: 307
• Species: Rattus norvegicus
• Alignment Length: 301
• Identity: 122/301 - (40%)
• Similarity: 160/301 - (53%)
• Gaps: 31/301 - (10%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |||:|||:.:|:|..||.||..:|.:....|..:|||.|||.|.|:.::|.|..|...||..|.:
  Rat     8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAV 72

  Fly   122 NSKKVDPKKA-----KARHG------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQ 175
            :...|:.|:|     .||.|      |:|||||..::::.::..:|.|||.:.:.|:..|||..:
  Rat    73 DGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGK 137

  Fly   176 RKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGG----MRGGPRGGMRGGRG 236
            ::||.|:.|.|..............|.|..|:||:|.||.:....||    .||| |||.||..|
  Rat   138 KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGG-RGGGRGRGG 201

  Fly   237 GYGGRGGYNNQWDGQGSYGGYG--GGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYG-------- 291
            |.||.||.:.....:|..|||.  ||||||||  ||....||.|.|.|||....|:|
  Rat   202 GGGGGGGRDQNGLAKGGGGGYNSYGGYGGYGA--YGGGGGGGSYGGSDYGNGFGGFGSYSQHQSS 264

  Fly   292 -GGFEGNGYGGGGGGNMGG-GRGGP-RGGGGPKGGGGFNGG 329
             |..:..|.||||||:.|| ...|| |||.|..||||:.||
  Rat   265 YGPMKSGGGGGGGGGSWGGRSNSGPYRGGYGGGGGGGYGGG 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	28/70 (40%)
		RRM2_hnRNPD_like	137..211	CDD:240775	24/73 (33%)
Hnrnpa0	NP_001387712.1	RRM1_hnRNPA0	5..83	CDD:409764	30/74 (41%)
		RRM2_hnRNPA0	99..178	CDD:409993	27/78 (35%)