DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment sqd and LOC681410

DIOPT Version :9

Sequence 1:	NP_731825.1	Gene:	sqd / 41666	FlyBaseID:	FBgn0263396	Length:	344	Species:	Drosophila melanogaster
Sequence 2:	XP_003751688.1	Gene:	LOC681410 / 681410	RGDID:	1595414	Length:	307	Species:	Rattus norvegicus

Alignment Length:	301	Identity:	122/301 - (40%)
Similarity:	160/301 - (53%)	Gaps:	31/301 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |||:|||:.:|:|..||.||..:|.:....|..:|||.|||.|.|:.::|.|..|...||..|.:
  Rat     8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAV 72

  Fly   122 NSKKVDPKKA-----KARHG------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQ 175
            :...|:.|:|     .||.|      |:|||||..::::.::..:|.|||.:.:.|:..|||..:
  Rat    73 DGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGK 137

  Fly   176 RKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGG----MRGGPRGGMRGGRG 236
            ::||.|:.|.|..............|.|..|:||:|.||.:....||    .||| |||.||..|
  Rat   138 KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGG-RGGGRGRGG 201

  Fly   237 GYGGRGGYNNQWDGQGSYGGYG--GGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYG-------- 291
            |.||.||.:.....:|..|||.  ||||||||  ||....||.|.|.|||....|:|
  Rat   202 GGGGGGGRDQNGLAKGGGGGYNSYGGYGGYGA--YGGGGGGGSYGGSDYGNGFGGFGSYSQHQSS 264

  Fly   292 -GGFEGNGYGGGGGGNMGG-GRGGP-RGGGGPKGGGGFNGG 329
             |..:..|.||||||:.|| ...|| |||.|..||||:.||
  Rat   265 YGPMKSGGGGGGGGGSWGGRSNSGPYRGGYGGGGGGGYGGG 305

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	28/70 (40%)
sqd	NP_731825.1	RRM2_hnRNPD_like	137..211	CDD:240775	24/73 (33%)
LOC681410	XP_003751688.1	RRM1_hnRNPA0	5..83	CDD:240772	30/74 (41%)
		RRM2_hnRNPA0	99..178	CDD:241023	27/78 (35%)
		HnRNPA1	250..>269	CDD:288479	3/18 (17%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910