DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment sqd and AT5G08695

DIOPT Version :9

Sequence 1:	NP_731825.1	Gene:	sqd / 41666	FlyBaseID:	FBgn0263396	Length:	344	Species:	Drosophila melanogaster
Sequence 2:	NP_001119193.1	Gene:	AT5G08695 / 6241377	AraportID:	AT5G08695	Length:	690	Species:	Arabidopsis thaliana

Alignment Length:	147	Identity:	43/147 - (29%)
Similarity:	65/147 - (44%)	Gaps:	38/147 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 VDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKE 71
            :|.|:..:...||  .||...|       ...:||.|...|.        :|||.||.:.|||:|
plant   195 IDGEVKADRVDKD--DDGHAME-------VEADGSDDVLDAG--------RLFVHGLPYSTTEEE 242

  Fly    72 LRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE----AIDK------------VSAADEHI 120
            |.:||.|:|:|..:::..|..|...||.||:::...|    |:||            :..|....
plant   243 LMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILPAKPRA 307

  Fly   121 INSKKVD-----PKKAK 132
            :::|:||     ||..|
plant   308 MSAKQVDNSSNLPKSFK 324

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	29/91 (32%)
sqd	NP_731825.1	RRM2_hnRNPD_like	137..211	CDD:240775
AT5G08695	NP_001119193.1	RRM1_MRD1	4..79	CDD:241009
		ELAV_HUD_SF	6..300	CDD:273741	36/121 (30%)
		RRM3_RBM19_RRM2_MRD1	228..301	CDD:240762	25/72 (35%)
		ELAV_HUD_SF	229..618	CDD:273741	32/96 (33%)
		RRM4_RBM19_RRM3_MRD1	421..492	CDD:240763
		RRM_SF	536..615	CDD:302621
		RRM_SF	635..>661	CDD:302621
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48033
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010