Protein Alignment sqd and CG34334

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001097042.1
• Gene: CG34334 / 5740122
• FlyBaseID: FBgn0263829
• Length: 708
• Species: Drosophila melanogaster
• Alignment Length: 343
• Identity: 66/343 - (19%)
• Similarity: 107/343 - (31%)
• Gaps: 121/343 - (35%)

  Fly     9 TEINGEDFT----KDVTADGPGSENGDAGAAGSTNGSS------DNQSAASGQ------------ 51
            |:..|:..|    |.|..:..||:.|......|...:|      .|.||:||.
  Fly   356 TKNKGDSSTGQSSKTVVTNNAGSKAGYQAPKTSVASTSSKAVVRSNASASSGHGNHTSSSSSFTQ 420

  Fly    52 ----------RDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDP--------------- 91
                      :|.|:          :.::......|..|:...||   ||
  Fly   421 LHSSARPSTAKDHDK----------SPQQNRSGSSGPKGKSSKIN---DPPRRGSSPSAGAEPTR 472

  Fly    92 -------QTGRS---------------------RGFAFIVFTNTEAIDKVSAADEHIINSKKVDP 128
                   |.||:                     ||:..:     ..::||:..     |.|....
  Fly   473 QKQSVQNQNGRNCSSQWNHRRGEGDGEGAEASGRGYRAV-----GEVNKVAYR-----NGKDAFK 527

  Fly   129 KKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDK-QKSQRKGFCFITFDSEQVVTD 192
            .:...|:.::.:.|||.:::.|.|...||.||.:..|:.|.|: |..|.:|:.|:.:...:....
  Fly   528 FRQPVRNVRLHIKGLTRQVTKEHITEIFGHFGALTAVDFPMDRFQGRQGRGYAFVEYSRPEDCAS 592

  Fly   193 LLKTPK-QKIAGKEVDV---------------KRATPKPENQMM-----GGMRGGPRGGMRGGRG 236
            .:|... .:|.||.:.|               :|.:|....|..     .|.....|...|...|
  Fly   593 AIKHMNGGQIDGKLIRVSAFQESMLKAPWRQYRRYSPVNRRQSQRTLSRSGSSSRSRSPSRSASG 657

  Fly   237 G-YGGRGGYNNQWDGQGS 253
            . ||.|..::......||
  Fly   658 SEYGSRSSHSRVRSMSGS 675

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	15/113 (13%)
		RRM2_hnRNPD_like	137..211	CDD:240775	21/90 (23%)
CG34334	NP_001097042.1	Herpes_BLLF1	<312..504	CDD:282904	26/160 (16%)
		RRM_RNPS1	537..610	CDD:409800	20/72 (28%)