Protein Alignment sqd and rbm4.1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_955999.1
• Gene: rbm4.1 / 573001
• ZFINID: ZDB-GENE-030131-3902
• Length: 419
• Species: Danio rerio
• Alignment Length: 290
• Identity: 81/290 - (27%)
• Similarity: 122/290 - (42%)
• Gaps: 71/290 - (24%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |:|||.||..||.:|:|..|.:||:|...::        .:.|.|:      .:|..|.|||.|.
Zfish     3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDI--------VKNFGFV------HMDSKSEADEAIQ 53

  Fly   122 N---------SKKVDPKKAKARHG-KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQR 176
            |         :..|:..|.|.:.. |..||.:::..:::|::..|.::|.:||.::.
Zfish    54 NLHHYMLNGMAMNVEMSKGKPKTSTKPHVGNISSSCTNQELRAKFEEYGPVVECDIV-------- 110

  Fly   177 KGFCFITF----DSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGG--R 235
            |.:.|:..    |:.:.::.|..|..|   ||.:.||.:|.:        :|..|..|.|.|  |
Zfish   111 KDYAFVHMERVEDAMEAISGLDNTAFQ---GKLMSVKLSTSR--------LRTAPGMGERTGCYR 164

  Fly   236 GGYGGRGGYNNQWDGQGSY--GGYGGGYG------------GYGAGGYGD-YYAG------GYYN 279
            .|..|........|..|||  |....|:|            |:..|..|: .|||      |:..
Zfish   165 CGQEGHWSKECPLDQNGSYREGPSSEGFGPVRFDSGGDRGRGFHRGFSGEPAYAGSFAPSHGFTR 229

  Fly   280 GYDYGYDGYGYGGGFE-GNGYGGGGGGNMG 308
            |..|...|||.|.||| ..|||...|..:|
Zfish   230 GAGYAVPGYGRGAGFESAMGYGMPAGYGVG 259

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	23/79 (29%)
		RRM2_hnRNPD_like	137..211	CDD:240775	18/77 (23%)
rbm4.1	NP_955999.1	RRM1_RBM4	2..68	CDD:410018	23/78 (29%)
		RRM2_RBM4	78..144	CDD:410019	16/76 (21%)
		PTZ00368	148..>182	CDD:173561	9/41 (22%)
		ZnF_C2HC	161..176	CDD:197667	4/14 (29%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	322..341
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	349..371