DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and DAZ4

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001375413.1 Gene:DAZ4 / 57135 HGNCID:15966 Length:723 Species:Homo sapiens


Alignment Length:278 Identity:60/278 - (21%)
Similarity:102/278 - (36%) Gaps:103/278 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKL-----FVGGLSWETTEKELRDHFGKY 79
            ::|..|.:.|.......||..||  .:|:.|....:.|:     ||||:.....|.|:...||:|
Human     1 MSAANPETPNSTISREASTQSSS--AAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 63

  Fly    80 GEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSK-KVDP----KKAKARH---- 135
            |.::.:.:.|: :||.|:|:.|:.|.|...:.|:..:..|....| |:.|    :|..|||    
Human    64 GSVKEVKIITN-RTGVSKGYGFVSFVNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127

  Fly   136 ----------------------------------------------------------------- 135
                                                                             
Human   128 PLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAAS 192

  Fly   136 -------GKI-----FVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQ 188
                   |||     ||||:...:.:.||.:.||::|::.||:: ...:....||:.|::|.::.
Human   193 QGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFVNDV 256

  Fly   189 VVTDLLKTPKQKIAGKEV 206
            .|        |||.|.::
Human   257 DV--------QKIVGSQI 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 23/80 (29%)
RRM2_hnRNPD_like 137..211 CDD:240775 22/75 (29%)
DAZ4NP_001375413.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 7/27 (26%)
RRM_DAZL 35..116 CDD:410073 24/81 (30%)
PABP-1234 42..412 CDD:130689 50/235 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..192 0/28 (0%)
RRM_DAZL 200..281 CDD:410073 23/76 (30%)
Daz 407..427 CDD:465893
Daz 431..451 CDD:465893
Daz 455..475 CDD:465893
Daz 479..499 CDD:465893
Daz 503..523 CDD:465893
Daz 527..547 CDD:465893
Daz 551..571 CDD:465893
Daz 575..595 CDD:465893
Daz 599..619 CDD:465893
Daz 623..643 CDD:465893
Daz 647..667 CDD:465893
Daz 671..691 CDD:465893
Blue background indicates that the domain is not in the aligned region.

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