DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and hnrnpd

DIOPT Version :9

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001103930.1 Gene:hnrnpd / 560522 ZFINID:ZDB-GENE-070424-97 Length:314 Species:Danio rerio


Alignment Length:349 Identity:135/349 - (38%)
Similarity:185/349 - (53%) Gaps:59/349 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GEDFT----KDVTADGPGSE--NGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKE 71
            |||.|    ::...:|.|.|  :||.|..|...||..:   ||...:|:.|:|||||||:||:|:
Zfish     8 GEDPTMKMEENDDGEGFGEEQMSGDNGGQGEAEGSKID---ASKNEEDEGKMFVGGLSWDTTKKD 69

  Fly    72 LRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARH- 135
            |:|:|.|:||:....:|.||.|||||||.|::|...|:::||....||.:|.|.:|||||||.. 
Zfish    70 LKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKT 134

  Fly   136 ----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
                .|||||||:.:..:|:|:.||..:|.:..:|:|.:.:.::|:|||||||..|:.|..:::.
Zfish   135 KEPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK 199

  Fly   197 PKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGY----GGRGGYNNQWDGQGSYGGY 257
            ....|...:.:||.|..|.:.|..         ...||||||    .||||.|..|: || ||.|
Zfish   200 MYHNIGLSKCEVKVAMSKEQYQQQ---------QQWGGRGGYTSRGRGRGGPNQNWN-QG-YGNY 253

  Fly   258 -GGGYGGYGAGGYGDYYAGGYYNGYDY-GYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGP 320
             ..|||.||..||.:...|| |.|||| ||:.|          ||.|...|...|.         
Zfish   254 WNQGYGNYGNYGYNNQGYGG-YGGYDYSGYNNY----------YGYGDYSNQQSGY--------- 298

  Fly   321 KGGGGFNGGKQRGGGGRQQRHQPY 344
                    ||.:..||.|..::||
Zfish   299 --------GKSQRRGGHQNSYKPY 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM_SF 58..129 CDD:302621 36/70 (51%)
RRM2_hnRNPD_like 137..211 CDD:240775 27/73 (37%)
hnrnpdNP_001103930.1 CBFNT 3..54 CDD:285369 16/48 (33%)
RRM1_hnRNPD_like 56..129 CDD:241019 38/72 (53%)
RRM2_hnRNPD 140..214 CDD:241027 27/73 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8173
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I3348
OMA 1 1.010 - - QHG45859
OrthoDB 1 1.010 - - D1055256at2759
OrthoFinder 1 1.000 - - FOG0001417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_112757
Panther 1 1.100 - - O PTHR48033
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4769
SonicParanoid 1 1.000 - - X985
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.970

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