Protein Alignment sqd and hnrnpd

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001103930.1
• Gene: hnrnpd / 560522
• ZFINID: ZDB-GENE-070424-97
• Length: 314
• Species: Danio rerio
• Alignment Length: 349
• Identity: 135/349 - (38%)
• Similarity: 185/349 - (53%)
• Gaps: 59/349 - (16%)

  Fly    13 GEDFT----KDVTADGPGSE--NGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKE 71
            |||.|    ::...:|.|.|  :||.|..|...||..:   ||...:|:.|:|||||||:||:|:
Zfish     8 GEDPTMKMEENDDGEGFGEEQMSGDNGGQGEAEGSKID---ASKNEEDEGKMFVGGLSWDTTKKD 69

  Fly    72 LRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARH- 135
            |:|:|.|:||:....:|.||.|||||||.|::|...|:::||....||.:|.|.:|||||||..
Zfish    70 LKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKT 134

  Fly   136 ----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
                .|||||||:.:..:|:|:.||..:|.:..:|:|.:.:.::|:|||||||..|:.|..:::.
Zfish   135 KEPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK 199

  Fly   197 PKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGY----GGRGGYNNQWDGQGSYGGY 257
            ....|...:.:||.|..|.:.|..         ...||||||    .||||.|..|: || ||.|
Zfish   200 MYHNIGLSKCEVKVAMSKEQYQQQ---------QQWGGRGGYTSRGRGRGGPNQNWN-QG-YGNY 253

  Fly   258 -GGGYGGYGAGGYGDYYAGGYYNGYDY-GYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGP 320
             ..|||.||..||.:...|| |.|||| ||:.|          ||.|...|...|.
Zfish   254 WNQGYGNYGNYGYNNQGYGG-YGGYDYSGYNNY----------YGYGDYSNQQSGY--------- 298

  Fly   321 KGGGGFNGGKQRGGGGRQQRHQPY 344
                    ||.:..||.|..::||
Zfish   299 --------GKSQRRGGHQNSYKPY 314

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	36/70 (51%)
		RRM2_hnRNPD_like	137..211	CDD:240775	27/73 (37%)
hnrnpd	NP_001103930.1	CBFNT	3..54	CDD:311868	16/48 (33%)
		RRM_SF	50..129	CDD:473069	40/78 (51%)
		RRM2_hnRNPD	140..214	CDD:241027	27/73 (37%)