Protein Alignment sqd and RBM23

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001339693.1
• Gene: RBM23 / 55147
• HGNCID: 20155
• Length: 483
• Species: Homo sapiens
• Alignment Length: 216
• Identity: 49/216 - (22%)
• Similarity: 93/216 - (43%)
• Gaps: 31/216 - (14%)

  Fly    49 SGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAID-- 111
            |.:..|.|.:|...|:.....::|.|.|...|::..:.:.:|..:.||:|.|::.|...:::.
Human   203 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA 267

  Fly   112 ---------------KVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGN 161
                           :.|.|:::.:.:...:.:|......:::||.|...|:::.::..|..||.
Human   268 IGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGK 332

  Fly   162 IVEVEMPFDKQKSQRKGFCFITF-DSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRG 225
            |..:.:..|....:.||:.|||| |||.....|.:....::||:.:.|...|.:        :.|
Human   333 IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER--------LDG 389

  Fly   226 G-----PRGGMRGGRGGYGGR 241
            |     |.|......|..|||
Human   390 GTDITFPDGDQELDLGSAGGR 410

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	14/87 (16%)
		RRM2_hnRNPD_like	137..211	CDD:240775	22/74 (30%)
RBM23	NP_001339693.1	SF-CC1	143..482	CDD:273721	49/216 (23%)