Protein Alignment sqd and cirbp

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001017228.1
• Gene: cirbp / 549982
• XenbaseID: XB-GENE-492781
• Length: 166
• Species: Xenopus tropicalis
• Alignment Length: 240
• Identity: 70/240 - (29%)
• Similarity: 89/240 - (37%)
• Gaps: 94/240 - (39%)

  Fly    54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE-AIDKVSAAD 117
            |:.|||||||::||||:.|...|.|||::..:.|..|.::.|||||.|:.|.|.| |.|.:.|
 Frog     4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA-- 66

  Fly   118 EHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFI 182
               :|.|.||
 Frog    67 ---MNGKSVD------------------------------------------------------- 73

  Fly   183 TFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGG---MRGGRG-------G 237
                                |:::.|.:| .|..|...||.|||..||   .|||||       |
 Frog    74 --------------------GRQIRVDQA-GKSSNDRRGGYRGGSSGGRGFFRGGRGRGGGGDRG 117

  Fly   238 YGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYD 282
            |||...:.|:..|..|.|  ...|.|...|.|||...|.|.:.||
 Frog   118 YGGSSRFENRSGGYQSSG--SRDYYGRSHGSYGDRSGGSYRDSYD 160

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	33/71 (46%)
		RRM2_hnRNPD_like	137..211	CDD:240775	2/73 (3%)
cirbp	NP_001017228.1	RRM_CIRBP_RBM3	6..85	CDD:409883	37/159 (23%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	68..166		39/171 (23%)